Mock sample for your project: Lumminary API
Integrate with "Lumminary API" from lumminary.com in no time with Mockoon's ready to use mock sample
Lumminary API
lumminary.com
Version: 1.0
Speed up your application development by using "Lumminary API" ready-to-use mock sample. Mocking this API will allow you to start working in no time. No more accounts to create, API keys to provision, accesses to configure, unplanned downtime, just work.
It also improves your integration tests' quality and reliability by accounting for random failures, slow response time, etc.
Description
Introduction
The Lumminary API was built to allow third parties to interact with Lumminary customers and gain access to their genetic data. The Lumminary API is fast, scalable and highly secure. All requests to the Lumminary API take place over SSL, which means all communication of Customer data is encrypted.
Before we dive in, some definitions. This is what we mean by:
|Term|Definition|
|-----------|-----------|
|Third party|A third party (also referred to as "partner" or as "you") is a company which offers services and products using genetic data.|
|Lumminary clients|The Lumminary client (also referred to as "customer") is an individual who has created an account on the Lumminary platform.|
|Lumminary|This is us - our services including the Lumminary platform, the API, the DNA App Store, the DNA Vault, the "Connect with Lumminary" button, and the website in its totality. |
|CWL|This is the acronym for the "Connect with Lumminary" button.|
|dataset|This is the term we use when we refer to a customer's genetic data.|
|Lumminary API|This is a library/module that you can use to integrate your apps with the Lumminary platform.|
|Lumminary toolkit|This is a stand alone application which helps you integrate with Lumminary without writing any code or interacting with the Lumminary API.|
Let's dive in, now.
Overview
Install Lumminary API Client and Toolkit
Obtaining credentials
Query customers authorizations
Query customer genetic data
Submit reports
"Connect with Lumminary" button
API specs
Overview
In order to use Lumminary services, you'll need to install the Lumminary API Client or Toolkit. The Lumminary API Client and Toolkit are available in multiple programming languages, and we also provide a sandbox environment which you can use for integration and tests.
There are a couple of differences between the API Client and the Toolkit. Mainly, it's about the ease of use for integration. The Toolkit is basically a stand-alone application that facilitates the integration with the Lumminary API without the need to modify your already existing code.
You use the Lumminary API Client when you want to integrate it inside your own application. This means it gives you full flexibility regarding the integration into your own workflow.
You use the Lumminary Toolkit for an integration where the Toolkit is placed alongside your own application. You can use the Toolkit from the CLI - for example, to run a cronjob that processes incoming orders. The Toolkit uses the Lumminary API Client.
Install Lumminary API Client and/or Toolkit
We provide the Lumminary API Client and Toolkit in multiple programming languages - default are PHP (minimum version 7.0), Python2.7 and Python3. However, if you need them in another language (Java, Obj-C, JavaScript, C#, Perl, CURL), please contact us.
How to install the Lumminary API Client
PHP example:
The PHP Lumminary API Client is available at: https://github.com/Lumminary/lumminary-api-client-php
If you are already using Composer, you can import the project by adding the following to your composer.json
| Error Id | Error Message |
|:-----------------:|:---------------------------------------------------------------------------------------------|
| 1 | Invalid Security Token |
| 2 | Invalid Access Scopes |
| 3 | Customer refuses your request (this happens when the customer cancels instead of granting access) |
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CROssBAR Data API
CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
CROssBAR is a comprehensive system that integrates large-scale biomedical data from various resources e.g UniProt, ChEMBL, Drugbank, EFO, HPO, InterPro & PubChem and stores them in a new NoSQL database, enrich these data with deep learning based prediction of relations between numerous biomedical entities, rigorously analyse the enriched data to obtain biologically meaningful modules and display them to the user via easy to interpret, interactive and heterogeneous knowledge graphs.
CROssBAR platform exposes a set of 12 endpoints to query data stored in the CROssBAR database. These endpoints help the user to find data of interest using different parameters provided by the API endpoint.
For example,
https://www.ebi.ac.uk/tools/crossbar/proteins?accession=A0A023GRW5 -> will provide protein information about accession 'A0A023GRW5' including its interactions, functions, cross-references, variations and more.
https://www.ebi.ac.uk/tools/crossbar/activities?moleculeChemblId=CHEMBL465983 -> will provide ChEMBL bio-interactions related information including targets and bio-activity measurements associated with molecule chembl id 'CHEMBL465983'
Knowledge graphs
Another use case of CROssBAR's API endpoints is in building knowledge graphs. These endpoints can be weaved together (output from one API endpoint fed as input to another API endpoint) programmatically to link nodes like protein, disease, drugs etc. as nodes of the graph. The endpoints are designed to be independent from each other which allows users the flexibility to drive biological networks from any facet e.g drug-centric, disease-centric, gene-centric etc. Our service for knowledge graph construction is available at https://crossbar.kansil.org.
An example for the part of the background queries on the CROssBAR API during the construction of a knowledge graph,
(with the aim of keeping the example simple, we have only included the processes related to pathways, genes/proteins and drugs/compounds)
In this example, we would like to find bio-active compounds (with a pChEMBL value threshold of at least 6.0) & drugs targeting all proteins belonging to "WNT ligand biogenesis and trafficking" pathway (based on Reactome pathway annotations).
This can be achieved by using endpoints listed on this swagger documentation as illustrated in following steps-
Find bio-active compounds (with a pChEMBL value threshold of at least 6.0) & drugs targeting all proteins belonging to "WNT ligand biogenesis and trafficking" pathway (based on Reactome annotations)
This can be achieved by using endpoints listed on this swagger documentation as illustrated in following steps-
Get all proteins from â/proteinsâ API endpoint which have a reactome pathway name equal to "WNT ligand biogenesis and trafficking".
From the collection of uniprot protein accessions collected from step 1 above, we query â/targetsâ API endpoint to obtain the âtargetchemblidâs of these proteins.
From the collection of targetchemblids collected from step 2 above, we query â/activitiesâ API endpoint with pChEMBL value >=6, to obtain the âmoleculechemblidâs of the molecules that we need.
From the collection of uniprot protein accessions collected from step 1 above, we find out Drug names and ids from the â/drugsâ API endpoint that targets our proteins.
From the collection of âmoleculechemblidâs obtained in step3, we query â/moleculesâ endpoint to get the compounds that are interacting with the genes/proteins belonging to the âWNT ligand biogenesis and traffickingâ pathway.
U.S. EPA Enforcement and Compliance History Online (ECHO) - Detailed Facility Report (DFR)
DFR Rest Services provide multiple service endpoints, to retrieve detailed facility location, enforcement, compliance monitoring, and pollutant information for any single facility. See the Detailed Facility Report (DFR) Help Page (https://echo.epa.gov/help/reports/detailed-facility-report-help) for additional information on the DFR. Additionally, a Data Dictionary (https://echo.epa.gov/help/reports/dfr-data-dictionary) is also available.
There is one primary service end point, get_dfr, that provides all available DFR data. All other service end points that are exposed, will return data on a single section of the DFR.
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Additional ECHO Resources: Web Services, About ECHO's Data, Data Downloads
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U.S. EPA Enforcement and Compliance History Online (ECHO) - Effluent Charting and Reporting
ECHO provides integrated compliance and enforcement information for over 1 million regulated facilities nationwide.
EFF Rest Services provides the data for ECHO's Effluent Charts, a set of dynamic charts and tables of permitted effluent limits, releases, and violations over time for Clean Water Act (CWA) wastewater discharge permits issued under the National Pollutant Discharge Elimination System (NPDES).
See Effluent Charts Help (https://echo.epa.gov/help/reports/effluent-charts-help) for additional information.
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The are 3 service end points for Effluent Charts: getsummarychart, geteffluentchart, and downloadeffluentchart.
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1) Use getsummarychart to retrieve a summary matrix of effluent parameters by effluent outfall and an overall violation status for a provided NPDES Permit and date range.
2) Use geteffluentchart to retrieve detailed Discharge Limit, DMR and NPDES Violation information for a provided NPDES Permit, date range, effluent parameter, or outfall.
3) Use downloadeffluentchart to generate a Comma Separated Value (CSV) file of the detailed data provided with get_effluent chart, for a provided NPDES Permit, date range, effluent parameter, or outfall.
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